Burkholderia cenocepacia J2315 Summary

Burkholderia cenocepacia J2315 Summary

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Organism Name

Burkholderia cenocepacia J2315

Sequencing status

Complete

GC Content

66.9%

Whole Genome Summary

Feature Type	Number of Genes	Percentage of Total Genes
CDS	7116	98.52%
gene	13	0.18%
misc_RNA	21	0.3%
tRNA	73	1.02%

Chromosome/Plasmid Summary

Chromosome 1
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3870082 bp

3544 genes

66.7% GC

Feature Type	Number of Genes	Percentage of Total Genes
CDS	3464	97.75%
misc_RNA	15	0.43%
tRNA	65	1.84%

Chromosome 2
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3217062 bp

2816 genes

67.3% GC

Feature Type	Number of Genes	Percentage of Total Genes
CDS	2807	99.69%
misc_RNA	3	0.11%
tRNA	6	0.22%

Chromosome 3
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875977 bp

756 genes

66.9% GC

Feature Type	Number of Genes	Percentage of Total Genes
CDS	752	99.48%
misc_RNA	2	0.27%
tRNA	2	0.27%

Plasmid pBCJ2315
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92661 bp

107 genes

62.8% GC

Feature Type	Number of Genes	Percentage of Total Genes
CDS	93	86.92%
gene	13	12.15%
misc_RNA	1	0.94%

Subcellular Localization
(whole genome)

Localization	Number of Proteins	Percentage of Total Proteins	Download
Cytoplasmic	2812	39.52%
Cytoplasmic Membrane	1495	21.01%
Extracellular	92	1.3%
No localization assigned and computational localization prediction using PSORTB not performed	107	1.51%
Outer Membrane	149	2.1%
Periplasmic	224	3.15%
Unknown	2164	30.42%
Unknown (This protein may have multiple localization sites)	180	2.53%
Total	7116	100%

Subcellular Localization
(by chromosome/plasmid)

Chromosome 1
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Localization	Number of Proteins	Percentage of Total Proteins	Download
Cytoplasmic	1483	42.82%
Cytoplasmic Membrane	721	20.82%
Extracellular	35	1.02%
No localization assigned and computational localization prediction using PSORTB not performed	80	2.31%
Outer Membrane	60	1.74%
Periplasmic	101	2.92%
Unknown	985	28.44%
Unknown (This protein may have multiple localization sites)	79	2.29%
Total	3464	100%
PSORTb Summary

Chromosome 2
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Localization	Number of Proteins	Percentage of Total Proteins	Download
Cytoplasmic	1029	36.66%
Cytoplasmic Membrane	598	21.31%
Extracellular	45	1.61%
No localization assigned and computational localization prediction using PSORTB not performed	9	0.33%
Outer Membrane	74	2.64%
Periplasmic	96	3.43%
Unknown	888	31.64%
Unknown (This protein may have multiple localization sites)	77	2.75%
Total	2807	100%
PSORTb Summary

Chromosome 3
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Localization	Number of Proteins	Percentage of Total Proteins	Download
Cytoplasmic	274	36.44%
Cytoplasmic Membrane	165	21.95%
Extracellular	12	1.6%
No localization assigned and computational localization prediction using PSORTB not performed	4	0.54%
Outer Membrane	14	1.87%
Periplasmic	20	2.66%
Unknown	244	32.45%
Unknown (This protein may have multiple localization sites)	23	3.06%
Total	752	100%
PSORTb Summary

Plasmid pBCJ2315
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Localization	Number of Proteins	Percentage of Total Proteins	Download
Cytoplasmic	26	27.96%
Cytoplasmic Membrane	11	11.83%
No localization assigned and computational localization prediction using PSORTB not performed	14	15.06%
Outer Membrane	1	1.08%
Periplasmic	7	7.53%
Unknown	47	50.54%
Unknown (This protein may have multiple localization sites)	1	1.08%
Total	93	100%
PSORTb Summary

NCBI Genome Project Page

Burkholderia cenocepacia J2315 Project ID:339

Genomes OnLine Database Page

Burkholderia cenocepacia J2315 GOLD ID: Gc00890

Date Added

2008-10-15

Last Updated

2010-03-17

GBrowse

View Chromosome_1 in GBrowse with all tracks selected.

View Chromosome_2 in GBrowse with all tracks selected.

View Chromosome_3 in GBrowse with all tracks selected.

View Plasmid_pBCJ2315 in GBrowse with all tracks selected.

BLAST

Database:	Burkholderia cenocepacia J2315
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Database:	Burkholderia cenocepacia J2315
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Genomic Islands Using IslandViewer

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Expression Profiling by Array

Burkholderia cenocepacia J2315
Link	Database	Experiment Title	Updated	Contributors	Citation
GSE15817	NCBI GEO	Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics	2010-3-02	Yoder-Himes DR, Konstantinidis KT, Tiedje JM.	Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics. PLoS One. 2010 Jan 15;5(1):e8724. PubMed: 20090946
GSE20096	NCBI GEO	Strains of increasing genetic divergence to the reference strain	2010-2-05
E-MEXP-2502	ArrayExpress	Transcription profiling of Burkholderia cenocepacia J2315 sessile cells to treatment with high doses of hydrogen peroxide, sodium hypochlorite and chlorhexidine	2009-12-17	Peeters E, Sass A, Mahenthiralingam E, Nelis H, Coenye T.	Transcriptional response of Burkholderia cenocepacia J2315 sessile cells to treatments with high doses of hydrogen peroxide and sodium hypochlorite. BMC Genomics. 2010 Feb 5;11:90. PubMed: 20137066
E-MEXP-1261	ArrayExpress	Transcription profiling of Burkholderia cepacia grown in cystic fibrosis sputum	2007-11-26

Burkholderia cenocepacia (please see genome summary pages for strain-specific experiments)
Link	Database	Experiment Title	Updated	Contributors	Citation

NCBI Trace Archive

Trace Archive for Burkholderia cenocepacia J2315

Trace Archive FTP

Annotations

Chromosome_1

Chromosome_2

Chromosome_3

Plasmid_pBCJ2315

Complete Genomic DNA Sequences

Chromosome_1

NC_011000

Chromosome_2

NC_011001

Chromosome_3

NC_011002

Plasmid_pBCJ2315

NC_011003

Intergenic DNA

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Protein Sequences

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Orthologs

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